in reference assembly

• CURIE: gmeow:inReferenceAssembly
• IRI: https://blackcatinformatics.ca/gmeow/inReferenceAssembly
• Category: property
• Defined by: gmeow:slices/places
• Box roles: RBox role (What is this?)

The reference assembly (e.g. GRCh38) in which these sequence coordinates are expressed. Functional: a coordinate tuple is expressed in exactly one assembly; coordinates in another assembly are a different SequenceCoordinates instance (Principle 11).

Structure

Property shape: object property; gmeow:SequenceCoordinates -> gmeow:ReferenceFrame; functional Sub-property of: gmeow:hasReferenceFrame

Practical Pattern

Use gmeow:inReferenceAssembly from gmeow:SequenceCoordinates to gmeow:ReferenceFrame when the relationship itself belongs in the native GMEOW graph.

Common Companion Terms

gmeow:hasReferenceFrame, gmeow:SequenceCoordinates, gmeow:ReferenceFrame

External Equivalences

Equivalent or closely aligned targets: faldo

Linkages

Generated from the canonical mapping DSL. SSSOM files are the generated public interchange form for term equivalences.

Term Equivalences

Usage Advice

Use when

• Use to declare the single reference assembly sequence coordinates are expressed in; functional, a subproperty of gmeow:hasReferenceFrame.

Avoid when

• Avoid omitting it and avoid reusing one SequenceCoordinates across assemblies — coordinates in another assembly are a different instance (Principle 11).

How to use

• Set exactly one gmeow:inReferenceAssembly; liftover to another assembly is a solver computation via gmeow:transformsTo.

Examples

• ex:brca1Coords gmeow:inReferenceAssembly gmeow:referenceFrameGRCh38.