sequence end
- CURIE:
gmeow:sequenceEnd - IRI: https://blackcatinformatics.ca/gmeow/sequenceEnd
- Category: property
- Defined by:
gmeow:slices/places - Box roles: RBox role (What is this?)
The 1-based inclusive end position of a feature on a biological sequence. Frame-relative: the meaning depends on the inReferenceAssembly (Principle 11).
Structure
Property shape: datatype property; gmeow:SequenceCoordinates -> xsd:positiveInteger; functional
Practical Pattern
Use gmeow:sequenceEnd from gmeow:SequenceCoordinates to xsd:positiveInteger when the relationship itself belongs in the native GMEOW graph.
Common Companion Terms
External Equivalences
Equivalent or closely aligned targets: faldo
Linkages
Generated from the canonical mapping DSL. SSSOM files are the generated public interchange form for term equivalences.
Term Equivalences
| Source | Kind | Profile | Predicate/Relation | Target | Evidence |
|---|---|---|---|---|---|
gmeow:sequenceEnd |
equivalence | - |
skos:closeMatch | faldo:end | gmeow-places.sssom.tsv; gmeow:eqPlaces170; confidence 0.9 |
Usage Advice
Use when
- Use for the 1-based inclusive end position of a feature on a sequence; functional, frame-relative.
Avoid when
- Avoid mixed conventions and avoid omitting the assembly frame.
How to use
- Set
gmeow:sequenceEndwithgmeow:sequenceStart; meaning depends ongmeow:inReferenceAssembly.
Examples
- ex:brca1Coords
gmeow:sequenceEnd43125483.