sequence start

• CURIE: gmeow:sequenceStart
• IRI: https://blackcatinformatics.ca/gmeow/sequenceStart
• Category: property
• Defined by: gmeow:slices/places
• Box roles: RBox role (What is this?)

The 1-based inclusive start position of a feature on a biological sequence. Frame-relative: the meaning depends on the inReferenceAssembly (Principle 11).

Structure

Property shape: datatype property; gmeow:SequenceCoordinates -> xsd:positiveInteger; functional

Practical Pattern

Use gmeow:sequenceStart from gmeow:SequenceCoordinates to xsd:positiveInteger when the relationship itself belongs in the native GMEOW graph.

Common Companion Terms

gmeow:SequenceCoordinates

External Equivalences

Equivalent or closely aligned targets: faldo

Linkages

Generated from the canonical mapping DSL. SSSOM files are the generated public interchange form for term equivalences.

Term Equivalences

Usage Advice

Use when

• Use for the 1-based inclusive start position of a feature on a sequence; functional, frame-relative.

Avoid when

• Avoid 0-based or exclusive conventions silently and avoid omitting the assembly frame (Principle 11).

How to use

• Set gmeow:sequenceStart with gmeow:sequenceEnd on the SequenceCoordinates; meaning depends on gmeow:inReferenceAssembly.

Examples

• ex:brca1Coords gmeow:sequenceStart 43044295.